SMTL ID : 4zi3.1

BART-like domain of BARTL1/CCDC104 aa1-133 in complex with Arl3FL bound to GppNHp in P1 21 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-1-1-mer

Ligands

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 21 residues within 4Å: Chain A: L.25, D.26, N.27, A.28, G.29, K.30, T.31, T.32, I.45, P.47, T.48, G.69, G.70, N.126, K.127, D.129, L.130, S.159, A.160, L.161 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:N.27, A:A.28, A:G.29, A:K.30, A:K.30, A:T.31, A:T.31, A:T.32, A:T.32, A:T.48, A:G.70, A:N.126, A:K.127, A:K.127, A:A.160, A:L.161 Water bridges: A:T.31, A:T.31, A:T.48, A:D.67, A:Q.71 Salt bridges: A:D.129 GNP.3: 20 residues within 4Å: Chain B: L.25, D.26, N.27, A.28, G.29, K.30, T.31, T.32, I.45, P.47, T.48, G.69, G.70, N.126, K.127, D.129, S.159, A.160, L.161 Ligands: MG.4 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.27, B:A.28, B:G.29, B:K.30, B:K.30, B:K.30, B:T.31, B:T.32, B:T.32, B:T.48, B:G.70, B:N.126, B:K.127, B:K.127, B:A.160, B:L.161 Water bridges: B:Q.71, B:Q.71 Salt bridges: B:D.129 pi-Cation interactions: B:K.127

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.31, T.48 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.31, A:T.48, H2O.2, H2O.2 MG.4: 3 residues within 4Å: Chain B: T.31, T.48 Ligands: GNP.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.31, B:T.48, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lokaj, M. et al., The Interaction of CCDC104/BARTL1 with Arl3 and Implications for Ciliary Function. Structure (2015)

Release Date

2016-03-23

Peptides

ADP-ribosylation factor-like protein 3: AB
Cilia- and flagella-associated protein 36: C
Cilia- and flagella-associated protein 36: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ADP-ribosylation factor-like protein 3

Cilia- and flagella-associated protein 36

Cilia- and flagella-associated protein 36

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