- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.3: 8 residues within 4Å:- Chain A: K.264, D.346, A.347, E.348, G.349, R.350, L.374
- Ligands: ZN.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.348, A:G.349, A:R.350, A:R.350, A:R.350
BCT.7: 8 residues within 4Å:- Chain B: K.264, D.346, A.347, E.348, G.349, R.350, L.374
- Ligands: ZN.5
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.264, B:G.349, B:R.350, B:L.374
BCT.11: 8 residues within 4Å:- Chain C: K.264, D.346, A.347, E.348, G.349, R.350, L.374
- Ligands: ZN.9
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.264, C:G.349, C:R.350, C:L.374
BCT.15: 8 residues within 4Å:- Chain D: K.264, D.346, A.347, E.348, G.349, R.350, L.374
- Ligands: ZN.13
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:G.349, D:R.350, D:R.350, D:R.350
BCT.19: 8 residues within 4Å:- Chain E: K.264, D.346, A.347, E.348, G.349, R.350, L.374
- Ligands: ZN.17
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:E.348, E:G.349, E:R.350, E:R.350, E:R.350
BCT.23: 8 residues within 4Å:- Chain F: K.264, D.346, A.347, E.348, G.349, R.350, L.374
- Ligands: ZN.21
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:G.349, F:R.350, F:R.350, F:R.350
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.4: 3 residues within 4Å:- Chain A: A.467, G.468, Y.471
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.468, A:Y.471
NA.8: 3 residues within 4Å:- Chain B: A.467, G.468, Y.471
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.467, B:Y.471
NA.12: 3 residues within 4Å:- Chain C: A.467, G.468, Y.471
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.468, C:Y.471
- Water bridges: C:E.384
NA.16: 3 residues within 4Å:- Chain D: A.467, G.468, Y.471
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.471, D:Y.471
NA.20: 3 residues within 4Å:- Chain E: A.467, G.468, Y.471
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:G.468, E:Y.471
- Water bridges: E:T.283
NA.24: 3 residues within 4Å:- Chain F: A.467, G.468, Y.471
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:Y.471, F:Y.471
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Modak, J.K. et al., Structural basis for substrate specificity of Helicobacter pylori M17 aminopeptidase. Biochimie (2016)
- Release Date
- 2015-12-23
- Peptides
- Cytosol aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x BCT: BICARBONATE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Modak, J.K. et al., Structural basis for substrate specificity of Helicobacter pylori M17 aminopeptidase. Biochimie (2016)
- Release Date
- 2015-12-23
- Peptides
- Cytosol aminopeptidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F