SMTL ID : 4zi9.1

Structure of mouse clustered PcdhgA1 EC1-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.209, N.211, D.241, D.243, N.247, D.296 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.211, A:D.241, A:D.243, A:N.247, A:D.296 CA.2: 8 residues within 4Å: Chain A: E.117, E.176, D.207, V.208, D.210, N.211, D.243 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.117, A:E.176, A:E.176, A:D.207, A:D.243 CA.3: 5 residues within 4Å: Chain A: E.117, D.174, E.176, D.210 Ligands: CA.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.117, A:D.174, A:E.176, A:D.210, H2O.7, H2O.7 CA.4: 8 residues within 4Å: Chain A: E.10, E.66, D.98, I.99, D.101, N.102, D.134 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.10, A:E.66, A:I.99, A:D.101, A:D.134 CA.5: 6 residues within 4Å: Chain A: N.100, N.102, D.132, D.134, N.138, D.189 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.134, A:N.138, A:D.189 CA.6: 6 residues within 4Å: Chain A: E.10, E.11, D.64, E.66, D.101 Ligands: CA.4 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.10, A:E.11, A:D.64, A:E.66, A:D.101, H2O.7 CA.7: 6 residues within 4Å: Chain B: N.100, N.102, D.132, D.134, N.138, D.189 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.134, B:N.138, B:D.189 CA.8: 8 residues within 4Å: Chain B: E.10, E.66, D.98, I.99, D.101, N.102, D.134 Ligands: CA.9 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.10, B:E.66, B:E.66, B:D.98, B:D.134 CA.9: 6 residues within 4Å: Chain B: E.10, E.11, D.64, E.66, D.101 Ligands: CA.8 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.10, B:E.11, B:D.64, B:E.66, B:D.101, H2O.14 CA.10: 6 residues within 4Å: Chain B: N.209, N.211, D.241, D.243, N.247, D.296 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.211, B:D.241, B:D.243, B:N.247, B:D.296 CA.11: 8 residues within 4Å: Chain B: E.117, E.176, D.207, V.208, D.210, N.211, D.243 Ligands: CA.12 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.117, B:E.176, B:E.176, B:D.207, B:D.243 CA.12: 5 residues within 4Å: Chain B: E.117, D.174, E.176, D.210 Ligands: CA.11 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.117, B:D.174, B:E.176, B:D.210, H2O.14, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicoludis, J.M. et al., Structure and Sequence Analyses of Clustered Protocadherins Reveal Antiparallel Interactions that Mediate Homophilic Specificity. Structure (2015)

Release Date

2015-10-28

Peptides

MCG133388, isoform CRA_t: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MCG133388, isoform CRA_t