SMTL ID : 4ziq.1

Crystal structure of trypsin activated alpha-2-macroglobulin from Escherichia coli.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: I.1341, L.1343, G.1344, D.1345, Y.1346, G.1347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.1345, A:Y.1346, A:G.1347 GOL.5: 6 residues within 4Å: Chain B: I.1341, L.1343, G.1344, D.1345, Y.1346, G.1347 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.1345, B:D.1345, B:Y.1346, B:G.1347

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: Y.1599 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: L.557, E.558, G.561 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.1400 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: Y.1599 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: L.557, E.558, G.561 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: R.1400 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Ferrer, I. et al., Structural and functional insights into Escherichia coli alpha 2-macroglobulin endopeptidase snap-trap inhibition. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-06-10

Peptides

Uncharacterized lipoprotein YfhM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized lipoprotein YfhM