SMTL ID : 4zjj.4 (3 other biounits)

PAK1 in complex with (S)-N-(tert-butyl)-3-((2-chloro-5-ethyl-8-fluoro-dibenzodiazepin-11-yl)amino)pyrrolidine-1-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 4OR: (S)-N-(tert-butyl)-3-((2-chloro-5-ethyl-8-fluoro-dibenzodiazepin-11-yl)amino)pyrrolidine-1-carboxamide(Non-covalent)

4OR.1: 17 residues within 4Å: Chain A: M.55, E.69, V.72, M.73, N.76, I.81, V.82, V.96, M.98, F.133, L.134, N.137, H.141, L.159, T.160, D.161, F.164 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:M.73, A:I.81, A:I.81, A:V.96, A:F.133, A:L.134, A:L.134, A:D.161, A:F.164 Hydrogen bonds: A:E.69 Water bridges: A:D.161, A:D.161

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.210, E.215, P.216 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.215, H2O.1, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karpov, A.S. et al., Optimization of a Dibenzodiazepine Hit to a Potent and Selective Allosteric PAK1 Inhibitor. Acs Med.Chem.Lett. (2015)

Release Date

2015-06-24

Peptides

Serine/threonine-protein kinase PAK 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Serine/threonine-protein kinase PAK 1

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