SMTL ID : 4zjn.1

Crystal structure of the bacteriophage G20C portal protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-12-mer

Ligands

12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: R.66, G.319, S.323, Q.326, E.367, E.368, R.369 Chain L: E.320, R.369 3 PLIP interactions: 1 interactions with chain L, 2 interactions with chain A Hydrogen bonds: L:R.369 Hydrophobic interactions: A:Q.326 Water bridges: A:R.66 MPD.2: 10 residues within 4Å: Chain A: E.320, R.369 Chain B: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.322, B:Q.326 Water bridges: B:R.66 MPD.3: 10 residues within 4Å: Chain B: R.369 Chain C: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369, N.370 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:V.322, C:Q.326 Water bridges: C:R.66 Hydrogen bonds: B:R.369 MPD.4: 9 residues within 4Å: Chain D: R.66, G.319, S.323, Q.326, E.367, E.368, R.369 Chain I: E.320, R.369 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain I Hydrophobic interactions: D:Q.326 Water bridges: D:R.66 Hydrogen bonds: I:R.369 MPD.5: 10 residues within 4Å: Chain D: E.320, R.369 Chain E: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:V.322, E:Q.326 Water bridges: E:R.66 MPD.6: 10 residues within 4Å: Chain E: R.369 Chain F: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369, N.370 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:V.322, F:Q.326 Water bridges: F:R.66 Hydrogen bonds: E:R.369 MPD.7: 9 residues within 4Å: Chain C: E.320, R.369 Chain G: R.66, G.319, S.323, Q.326, E.367, E.368, R.369 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain C Hydrophobic interactions: G:Q.326 Water bridges: G:R.66 Hydrogen bonds: C:R.369 MPD.8: 10 residues within 4Å: Chain G: E.320, R.369 Chain H: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:V.322, H:Q.326 Water bridges: H:R.66 MPD.9: 10 residues within 4Å: Chain H: R.369 Chain I: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369, N.370 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain H Hydrophobic interactions: I:V.322, I:Q.326 Water bridges: I:R.66 Hydrogen bonds: H:R.369 MPD.10: 9 residues within 4Å: Chain F: E.320, R.369 Chain J: R.66, G.319, S.323, Q.326, E.367, E.368, R.369 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain F Hydrophobic interactions: J:Q.326 Water bridges: J:R.66 Hydrogen bonds: F:R.369 MPD.11: 10 residues within 4Å: Chain J: E.320, R.369 Chain K: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:V.322, K:Q.326 Water bridges: K:R.66 MPD.12: 10 residues within 4Å: Chain K: R.369 Chain L: R.66, G.319, V.322, S.323, Q.326, E.367, E.368, R.369, N.370 4 PLIP interactions: 1 interactions with chain K, 3 interactions with chain L Hydrogen bonds: K:R.369 Hydrophobic interactions: L:V.322, L:Q.326 Water bridges: L:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, L.S. et al., Crystal structure of the bacteriophage G20C portal protein. To be published

Release Date

2015-05-27

Peptides

Portal protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

Portal protein