SMTL ID : 4zk5.1

MAP4K4 in complex with inhibitor GNE-495

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: S.78, H.80, I.83, T.85, E.107, K.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:S.78, A:H.80, A:I.83, A:T.85

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 5 residues within 4Å: Chain A: M.276, Q.277, R.278, P.279, Q.283 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.283

1 x 4P4: 8-amino-N-[1-(cyclopropylcarbonyl)azetidin-3-yl]-2-(3-fluorophenyl)-1,7-naphthyridine-5-carboxamide(Non-covalent)

4P4.3: 15 residues within 4Å: Chain A: V.32, Y.37, V.40, K.42, A.53, K.55, M.106, E.107, F.108, C.109, G.110, G.112, L.161, V.171, D.172 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.32, A:Y.37, A:V.40, A:K.55, A:F.108, A:L.161, A:V.171, A:V.171, A:D.172 Hydrogen bonds: A:E.107, A:C.109, A:C.109 pi-Stacking: A:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ndubaku, C.O. et al., Structure-Based Design of GNE-495, a Potent and Selective MAP4K4 Inhibitor with Efficacy in Retinal Angiogenesis. Acs Med.Chem.Lett. (2015)

Release Date

2015-09-02

Peptides

Mitogen-activated protein kinase kinase kinase kinase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitogen-activated protein kinase kinase kinase kinase 4

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