SMTL ID : 4zko.1

The crystal structure of upain-1-W3A in complex with uPA at pH7.4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x ALA- ARG: N-terminal fragment of upain-1-W3A(Non-covalent)

ALA-ARG.1: 12 residues within 4Å: Chain A: D.192, S.193, C.194, Q.195, S.198, S.217, W.218, G.219, G.221, G.229 Ligands: GLY-LEU.2, SO4.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.193, A:S.193, A:G.221 Water bridges: A:Q.195, A:Q.195, A:G.219, A:G.219, A:G.219, A:G.219, A:G.229, A:V.230 Salt bridges: A:D.192

1 x GLY- LEU: C-terminal fragment of upain-1-W3A(Non-covalent)

GLY-LEU.2: 6 residues within 4Å: Chain A: H.46, I.49, H.94, S.217 Ligands: ALA-ARG.1, SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.46, A:H.94 Water bridges: A:D.50

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: H.46, Q.195, G.196, S.198 Ligands: ALA-ARG.1, ALA-ARG.1, GLY-LEU.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.196, A:D.197, A:S.198, A:S.198 Water bridges: A:V.30 Salt bridges: A:H.46

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.4: 8 residues within 4Å: Chain A: S.26, V.27, T.28, Y.29, N.67, Y.148, L.149, Y.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.26, A:Y.29, A:Y.29 Water bridges: A:Y.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L. et al., The crystal structure of mupain-1-IG in complex with murinised human uPA at pH7.4. To Be Published

Release Date

2016-05-18

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

Urokinase-type plasminogen activator

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