SMTL ID : 4zmp.1

Crystal structure of human P-cadherin (ss-dimer Q101L)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: E.11, E.69, D.100, L.101, D.103, D.136 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:D.100, A:L.101, A:D.103, A:D.136 CA.2: 5 residues within 4Å: Chain A: E.11, D.67, E.69, D.103 Ligands: CA.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.11, A:D.67, A:E.69, A:D.103, H2O.1, H2O.2 CA.3: 6 residues within 4Å: Chain A: N.102, H.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.104, A:D.134, A:D.136, A:N.143, A:D.195 CA.4: 7 residues within 4Å: Chain B: E.11, E.69, D.100, L.101, D.103, D.136 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.100, B:L.101, B:D.103, B:D.136 CA.5: 5 residues within 4Å: Chain B: E.11, D.67, E.69, D.103 Ligands: CA.4 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.11, B:D.67, B:E.69, B:D.103, H2O.4, H2O.4 CA.6: 6 residues within 4Å: Chain B: N.102, H.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.104, B:D.134, B:D.136, B:N.143, B:D.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudo, S. et al., Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism. Structure (2016)

Release Date

2016-09-07

Peptides

Cadherin-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cadherin-3