- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 6 residues within 4Å:- Chain A: D.68, E.70, H.105, E.136
- Ligands: SO4.4, NI.5
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.105
SO4.4: 5 residues within 4Å:- Chain A: D.68, D.104, H.105
- Ligands: SO4.3, NI.5
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.105
SO4.8: 9 residues within 4Å:- Chain A: R.69, E.136, D.137, D.138, I.140
- Chain B: Q.111, T.113, F.114, R.115
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:D.138, B:Q.111, B:Q.111, B:R.115, B:R.115
- Water bridges: A:R.69
- Salt bridges: A:R.69
SO4.9: 1 residues within 4Å:- Chain B: R.21
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.21
SO4.10: 4 residues within 4Å:- Chain B: T.33, S.83, N.85, A.87
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.33, B:S.83, B:N.85, B:N.85
SO4.11: 5 residues within 4Å:- Chain B: D.68, D.104, H.105
- Ligands: SO4.12, NI.13
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.104
- Salt bridges: B:H.105
SO4.12: 7 residues within 4Å:- Chain B: D.68, E.70, E.71, H.105, E.136
- Ligands: SO4.11, NI.13
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.68
- Salt bridges: B:H.105
- 2 x NI: NICKEL (II) ION(Non-covalent)
NI.5: 3 residues within 4Å:- Chain A: H.105
- Ligands: SO4.3, SO4.4
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.105, H2O.1
NI.13: 4 residues within 4Å:- Chain B: H.105, E.136
- Ligands: SO4.11, SO4.12
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kudo, S. et al., Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism. Structure (2016)
- Release Date
- 2016-09-07
- Peptides
- Cadherin-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NI: NICKEL (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kudo, S. et al., Adhesive Dimerization of Human P-Cadherin Catalyzed by a Chaperone-like Mechanism. Structure (2016)
- Release Date
- 2016-09-07
- Peptides
- Cadherin-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B