SMTL ID : 4zn8.1

Using molecular dynamics simulations to predict domain swapping of computationally designed protein variants

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 1 residues within 4Å: Chain D: R.20 No protein-ligand interaction detected (PLIP) K.2: 2 residues within 4Å: Chain B: R.20 Chain C: Q.31 No protein-ligand interaction detected (PLIP) K.3: 2 residues within 4Å: Chain C: R.45, R.46 No protein-ligand interaction detected (PLIP) K.4: 2 residues within 4Å: Chain D: R.46, K.47 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mou, Y. et al., Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants. J.Mol.Biol. (2015)

Release Date

2015-05-27

Peptides

computationally modified engrailed homeodomain: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

computationally modified engrailed homeodomain