SMTL ID : 4zno.1

Crystal structure of Dln1 complexed with sucrose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: G.34, G.35, R.107, G.151, S.152, D.153, D.155 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.107, A:S.152, A:D.153, A:G.35, A:G.151, A:S.152, A:D.153, A:D.153 Water bridges: A:R.107 GLC-FRU.2: 8 residues within 4Å: Chain B: G.34, G.35, W.59, R.107, G.151, S.152, D.153, D.155 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.107, B:S.152, B:D.153, B:G.35, B:G.151, B:S.152, B:D.153, B:D.153 Water bridges: B:R.107, B:D.155

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: G.101, N.102, G.103, A.104, G.105 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: G.101, N.102, G.103, A.104, G.105 Ligand excluded by PLIP

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 4 residues within 4Å: Chain B: W.59, A.104, T.106, W.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.106, B:T.106 Water bridges: B:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, N. et al., Structural basis for receptor recognition and pore formation of a zebrafish aerolysin-like protein. Embo Rep. (2016)

Release Date

2016-01-20

Peptides

Natterin-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Natterin-like protein

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