- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x BGC: beta-D-glucopyranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.648, T.650, A.651
6 PLIP interactions:2 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.648, A:T.650, H2O.3, H2O.4, H2O.4, H2O.7
MG.12: 3 residues within 4Å:- Chain B: D.648, T.650, A.651
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.648, B:T.650, H2O.12, H2O.13, H2O.15, H2O.17
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: W.271, E.473
- Chain B: R.572
- Ligands: BGC.1
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.473, B:R.572, B:R.572
GOL.4: 8 residues within 4Å:- Chain A: R.143, E.214, N.218, Y.564, N.566, L.568
- Chain B: T.207, N.209
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.143, A:N.218, A:Y.564
- Water bridges: A:R.143, A:N.218, A:Y.564, A:N.566, A:L.568
GOL.5: 4 residues within 4Å:- Chain A: E.438, Y.439, T.440, K.467
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.439, A:T.440, A:T.440, A:K.467, A:K.467
GOL.8: 5 residues within 4Å:- Chain A: R.572
- Chain B: F.238, W.271, E.473
- Ligands: BGC.10
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.473, A:R.572, A:R.572
GOL.13: 8 residues within 4Å:- Chain A: T.207, N.209
- Chain B: R.143, E.214, N.218, Y.564, N.566, L.568
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Water bridges: A:N.209, B:E.214
- Hydrogen bonds: B:R.143, B:Y.564, B:Y.564
GOL.14: 6 residues within 4Å:- Chain B: Y.216, L.220, N.224, E.260, M.261, Y.688
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.260
GOL.15: 4 residues within 4Å:- Chain B: E.438, Y.439, T.440, K.467
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.439, B:T.440, B:T.440, B:K.467
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 5 residues within 4Å:- Chain A: W.470, L.477, R.481, L.482, P.483
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.482
PEG.9: 4 residues within 4Å:- Chain A: T.212, N.249, W.251
- Chain B: H.690
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.212, A:T.212, A:N.249
- Water bridges: A:D.242, A:N.249
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakajima, M. et al., Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua. Plos One (2016)
- Release Date
- 2016-05-18
- Peptides
- Lin1840 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x BGC: beta-D-glucopyranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakajima, M. et al., Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua. Plos One (2016)
- Release Date
- 2016-05-18
- Peptides
- Lin1840 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B