SMTL ID : 4zoe.1

Crystal Structure of beta-glucosidase from Listeria innocua

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.648, T.650 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.648, A:T.650, H2O.2, H2O.3, H2O.4, H2O.10 MG.3: 2 residues within 4Å: Chain B: D.648, T.650 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.648, B:T.650, H2O.28, H2O.29, H2O.30, H2O.33

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: R.143, E.214, N.218, Y.564, N.566, L.568 Chain B: T.207, N.209 9 PLIP interactions: 2 interactions with chain B, 7 interactions with chain A Water bridges: B:E.200, B:N.209, A:E.214, A:N.218, A:L.568 Hydrogen bonds: A:R.143, A:R.143, A:N.218, A:Y.564 GOL.4: 7 residues within 4Å: Chain A: T.207 Chain B: R.143, E.214, N.218, Y.564, N.566, L.568 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.143, B:R.143, B:E.214, B:N.218, B:N.566 Water bridges: A:N.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakajima, M. et al., Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua. Plos One (2016)

Release Date

2016-05-18

Peptides

Lin1840 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lin1840 protein

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