SMTL ID : 4zpj.1

ABC transporter substrate-binding protein from Sphaerobacter thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

13 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.329 Ligands: CL.14, CL.15 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.329 ZN.2: 3 residues within 4Å: Chain A: D.419 Ligands: CL.16, CL.17 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.419 ZN.3: 3 residues within 4Å: Chain A: D.417 Ligands: CL.18, CL.19 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.417, A:D.417 ZN.4: 3 residues within 4Å: Chain A: E.188 Ligands: CL.20, CL.21 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.188 ZN.5: 1 residues within 4Å: Chain A: D.235 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.235, A:D.235 ZN.6: 2 residues within 4Å: Chain A: D.201, H.206 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.201, A:H.206, H2O.3, H2O.3 ZN.7: 2 residues within 4Å: Chain A: E.99, Q.114 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.99, A:E.99, H2O.2, H2O.2 ZN.8: 1 residues within 4Å: Chain A: E.386 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.386, A:E.386 ZN.9: 1 residues within 4Å: Chain A: E.244 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.244, A:E.244, H2O.3 ZN.10: 2 residues within 4Å: Chain A: E.317, E.320 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.317, A:E.317, A:E.320, A:E.320, H2O.3 ZN.11: 1 residues within 4Å: Chain A: E.95 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.95, A:E.95, H2O.1 ZN.12: 1 residues within 4Å: Chain A: D.138 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.138, A:D.138, H2O.2, H2O.3 ZN.13: 1 residues within 4Å: Chain A: D.413 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.413, A:D.413, H2O.2

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 3 residues within 4Å: Chain A: R.76, H.329 Ligands: ZN.1 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain A: R.76 Ligands: ZN.1 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain A: H.384, D.419 Ligands: ZN.2, CL.17 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Ligands: ZN.2, CL.16 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain A: N.380, P.416, D.417 Ligands: ZN.3 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain A: E.373, N.380, R.382, D.417 Ligands: ZN.3 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain A: Q.218, A.219 Ligands: ZN.4 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain A: Y.187, A.219 Ligands: ZN.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

OSIPIUK, J. et al., ABC transporter substrate-binding protein from Sphaerobacter thermophilus. to be published

Release Date

2015-05-20

Peptides

Extracellular ligand-binding receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Extracellular ligand-binding receptor