SMTL ID : 4zpo.1

Crystal Structure of Protocadherin Gamma C5 EC1-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain A: T.212, Q.214, N.236, T.238 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.212

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.207, N.209, D.239, D.241, N.245, D.295 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.209, A:D.239, A:D.241, A:N.245, A:D.295 CA.3: 4 residues within 4Å: Chain A: E.115, D.172, E.174, D.208 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.115, A:D.172, A:D.208 CA.4: 6 residues within 4Å: Chain A: E.115, E.174, D.205, V.206, D.208, D.241 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.115, A:E.174, A:D.205, A:V.206, A:D.241 CA.5: 6 residues within 4Å: Chain A: N.98, N.100, D.130, D.132, N.136, D.187 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.100, A:D.130, A:D.130, A:D.132, A:N.136 CA.6: 7 residues within 4Å: Chain A: E.8, E.64, D.96, L.97, D.99, N.100, D.132 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.8, A:E.64, A:L.97, A:D.99, A:D.132 CA.7: 6 residues within 4Å: Chain A: E.8, E.9, D.62, E.64, D.99, N.100 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.8, A:E.9, A:D.62, A:E.64, A:D.99

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.8: 4 residues within 4Å: Chain A: T.184, V.186, A.192, S.194 No protein-ligand interaction detected (PLIP) MAN.9: 4 residues within 4Å: Chain A: P.107, V.182, T.196, S.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.107

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.10: 4 residues within 4Å: Chain A: R.36, L.37, G.38, E.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.37, A:L.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubinstein, R. et al., Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions. Cell (2015)

Release Date

2015-10-28

Peptides

MCG133388, isoform CRA_f: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MCG133388, isoform CRA_f

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