SMTL ID : 4zps.1

Crystal Structure of Protocadherin Gamma A8 EC1-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.1: 2 residues within 4Å: Chain A: R.192, S.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.186 MAN.2: 4 residues within 4Å: Chain A: V.182, T.196, A.197, L.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.196

7 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: N.98, N.100, N.101, D.132, N.136, D.187 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:N.100, A:D.132, A:N.136, A:D.187 CA.4: 6 residues within 4Å: Chain A: E.115, E.174, D.205, T.206, D.208, D.241 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.174, A:D.205, A:T.206, A:D.208, A:D.241 CA.5: 6 residues within 4Å: Chain A: N.207, N.209, D.239, D.241, N.245, D.294 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.209, A:D.239, A:D.241, A:N.245, A:D.294 CA.6: 4 residues within 4Å: Chain A: E.115, D.172, E.174, D.208 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.172, A:E.174, A:D.208 CA.7: 7 residues within 4Å: Chain A: E.8, E.64, D.96, I.97, D.99, D.132 Ligands: CA.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.8, A:E.64, A:D.96, A:I.97 CA.8: 5 residues within 4Å: Chain A: E.8, D.62, E.64, D.99 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.8, A:D.62, A:E.64, A:D.99, A:D.99 CA.9: 4 residues within 4Å: Chain A: E.224, D.279, D.310, N.312 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.310, A:D.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubinstein, R. et al., Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions. Cell (2015)

Release Date

2015-10-28

Peptides

MCG133388, isoform CRA_m: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MCG133388, isoform CRA_m