SMTL ID : 4zql.2 (1 other biounit)

Crystal structure of TRIM24 with 3,4-dimethoxy-N-(6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)benzenesulfonamide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, H.27, C.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.27, A:C.30 ZN.2: 4 residues within 4Å: Chain A: C.19, C.22, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.45, A:C.48

1 x 4QH: 3,4-dimethoxy-N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl]benzenesulfonamide(Non-covalent)

4QH.3: 10 residues within 4Å: Chain A: L.100, A.101, F.102, V.106, P.107, V.110, Y.113, F.157, N.158, V.164 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.100, A:A.101, A:V.110 Hydrogen bonds: A:N.158

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: S.52, P.80, R.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.52 Salt bridges: A:R.84

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 4 residues within 4Å: Chain A: K.24, F.92, E.177, L.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.24 Water bridges: A:Y.174, A:N.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clark, P.G. et al., Crystal structure of TRIM24 with 3,4-dimethoxy-N-(6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)benzenesulfonamide inhibitor. To Be Published

Release Date

2015-06-17

Peptides

Transcription intermediary factor 1-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Transcription intermediary factor 1-alpha

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