SMTL ID : 4zr8.1

Structure of uroporphyrinogen decarboxylase from Acinetobacter baumannii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: H.192 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: N.233, Y.234 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.233 Water bridges: A:K.237 EDO.3: 5 residues within 4Å: Chain A: R.35, I.86, F.152, F.215 Ligands: CL.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.35 EDO.5: 4 residues within 4Å: Chain A: R.173, Q.177 Chain B: Y.306, W.343 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.173, A:R.173 EDO.6: 4 residues within 4Å: Chain A: Y.306, W.343 Chain B: R.173, Q.177 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.173, B:R.173, B:Q.177 EDO.7: 2 residues within 4Å: Chain B: N.233, Y.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.233 Water bridges: B:K.237 EDO.8: 5 residues within 4Å: Chain B: R.35, I.86, F.152, F.215 Ligands: CL.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.35 Water bridges: B:R.35

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: M.34, R.35, I.81, F.215 Ligands: EDO.3 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain B: M.34, R.35, I.81, F.215 Ligands: EDO.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Structure of uroporphyrinogen decarboxylase from Acinetobacter baumannii. To be Published

Release Date

2015-06-03

Peptides

Uroporphyrinogen decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uroporphyrinogen decarboxylase