SMTL ID : 4zsd.1

Human Cyclophilin D Complexed with an Inhibitor at room temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 7I6: 1-(4-aminobenzyl)-3-[(2S)-4-(methylsulfanyl)-1-{(2R)-2-[2-(methylsulfanyl)phenyl]pyrrolidin-1-yl}-1-oxobutan-2-yl]urea(Non-covalent)

7I6.1: 16 residues within 4Å: Chain A: R.54, I.56, F.59, M.60, Q.62, G.71, R.81, A.100, N.101, A.102, T.106, G.108, Q.110, F.112, L.121, H.125 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.59, A:A.102, A:F.112, A:L.121 Hydrogen bonds: A:Q.62, A:G.71, A:R.81, A:N.101, A:N.101 Water bridges: A:Q.110, A:Q.110 pi-Stacking: A:F.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., Combining `dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-08-12

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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