SMTL ID : 4zsf.1

Crystal structure of pre-specific restriction endonuclease BsaWI-DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 4 residues within 4Å: Chain A: K.96, L.111, D.115, M.119 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.115 Salt bridges: A:K.96, A:R.109, A:R.109 SIN.2: 4 residues within 4Å: Chain A: N.152, Y.157, W.256, L.257 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.152 Water bridges: A:N.153 SIN.5: 4 residues within 4Å: Chain C: K.96, L.111, D.115, M.119 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:D.115 Salt bridges: C:K.96, C:R.109, C:R.109 SIN.6: 4 residues within 4Å: Chain C: N.152, Y.157, W.256, L.257 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.152 Water bridges: C:N.153

4 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain A: D.239 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.239, H2O.2, H2O.7 CA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain C: D.239 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.239, H2O.12, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamulaitis, G. et al., Functional significance of protein assemblies predicted by the crystal structure of the restriction endonuclease BsaWI. Nucleic Acids Res. (2015)

Release Date

2015-10-07

Peptides

BsaWI endonuclease: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

BsaWI endonuclease