SMTL ID : 4zt1.1

Crystal structure of human E-Cadherin (residues 3-213) in x-dimer conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.100, N.102, D.132, D.134, N.141, D.193 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.134, A:N.141, A:D.193 CA.2: 8 residues within 4Å: Chain A: E.9, E.67, D.98, Q.99, D.101, N.102, D.134 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.9, A:E.67, A:E.67, A:D.98, A:D.134 CA.3: 5 residues within 4Å: Chain A: E.9, D.65, E.67, D.101 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.9, A:D.65, A:E.67, H2O.4, H2O.7 CA.4: 6 residues within 4Å: Chain B: N.100, N.102, D.132, D.134, N.141, D.193 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.132, B:D.134, B:N.141 CA.5: 8 residues within 4Å: Chain B: E.9, E.67, D.98, Q.99, D.101, N.102, D.134 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.9, B:E.67, B:E.67, B:D.98, B:D.134 CA.6: 5 residues within 4Å: Chain B: E.9, D.65, E.67, D.101 Ligands: CA.5 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.9, B:D.65, B:E.67, B:D.101, H2O.11, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nardone, V. et al., Crystal Structure of Human E-Cadherin-EC1EC2 in Complex with a Peptidomimetic Competitive Inhibitor of Cadherin Homophilic Interaction. J.Med.Chem. (2016)

Release Date

2016-06-01

Peptides

Cadherin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-1

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