SMTL ID : 4ztc.1

PglE Aminotransferase in complex with External Aldimine, Mutant K184A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 4RA: [(2R,3R,4R,5S,6R)-3-acetamido-6-methyl-5-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-4-oxidanyl-oxan-2-yl] [[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)

4RA.1: 31 residues within 4Å: Chain A: F.4, S.6, P.7, P.8, S.55, A.56, T.57, T.81, F.82, A.84, S.85, D.155, A.157, E.158, S.179, N.181, G.182, N.183, G.191, W.281, R.329, W.332 Chain B: N.25, Y.26, I.27, A.28, P.29, L.30, R.213, Y.219, N.227 31 PLIP interactions: 22 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:F.82, A:A.84, A:A.157, A:W.281, A:W.332 Hydrogen bonds: A:A.56, A:T.57, A:T.57, A:T.57, A:E.158, A:E.158, A:S.179, A:S.179, A:N.181, A:G.182, A:G.182, A:N.183, A:N.183, B:N.25, B:I.27, B:R.213, B:N.227 Water bridges: A:R.329, B:N.25, B:N.25, B:Q.211 Salt bridges: A:R.329, A:R.329, B:R.213 pi-Stacking: A:F.4, B:Y.26 4RA.2: 31 residues within 4Å: Chain A: N.25, Y.26, I.27, A.28, P.29, L.30, R.213, Y.219, N.227 Chain B: F.4, S.6, P.7, P.8, S.55, A.56, T.57, T.81, F.82, A.84, S.85, D.155, A.157, E.158, S.179, N.181, G.182, N.183, G.191, W.281, R.329, W.332 30 PLIP interactions: 10 interactions with chain A, 20 interactions with chain B Hydrogen bonds: A:N.25, A:I.27, A:R.213, A:Y.219, A:N.227, B:A.56, B:T.57, B:T.57, B:E.158, B:S.179, B:S.179, B:N.181, B:G.182, B:G.182, B:N.183, B:N.183 Water bridges: A:N.25, A:N.25, A:Q.211, B:R.329 Salt bridges: A:R.213, B:R.329, B:R.329 pi-Stacking: A:Y.26, B:F.4 Hydrophobic interactions: B:F.82, B:A.84, B:A.157, B:W.281, B:W.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riegert, A.S. et al., Structure of the external aldimine form of PglE, an aminotransferase required for N,N'-diacetylbacillosamine biosynthesis. Protein Sci. (2015)

Release Date

2015-07-29

Peptides

Aminotransferase homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminotransferase homolog