SMTL ID : 4zth.1

Structure of human p38aMAPK-arylpyridazinylpyridine fragment complex used in inhibitor discovery

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x VVT: 6-chloro-3-phenyl-4-(pyridin-4-yl)pyridazine(Non-covalent)

VVT.1: 11 residues within 4Å: Chain A: A.74, K.76, L.127, T.129, H.130, L.131, M.132, L.190, F.192, G.193, L.194 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.76, A:L.127, A:T.129, A:L.190 Hydrogen bonds: A:M.132

1 x GG5: 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE(Non-covalent)

GG5.2: 13 residues within 4Å: Chain A: P.214, E.215, L.218, W.220, L.259, P.265, L.269, K.272, I.273, I.282, L.314, D.315, S.316 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.214, A:E.215, A:L.218, A:L.218, A:W.220, A:P.265, A:L.269, A:L.269, A:I.273, A:I.282, A:L.314 Hydrogen bonds: A:S.316, A:S.316 Water bridges: A:S.274, A:D.317 pi-Stacking: A:W.220

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 4 residues within 4Å: Chain A: H.149, N.182, E.183, C.185 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roy, S.M. et al., A Selective and Brain Penetrant p38 alpha MAPK Inhibitor Candidate for Neurologic and Neuropsychiatric Disorders That Attenuates Neuroinflammation and Cognitive Dysfunction. J.Med.Chem. (2019)

Release Date

2016-06-22

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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