SMTL ID : 4zty.1

Neurospora crassa cobalamin-independent methionine synthase complexed with Cd2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

6 x CD: CADMIUM ION(Non-covalent)

CD.1: 7 residues within 4Å: Chain A: H.652, C.654, E.676, D.736, C.737 Ligands: CD.2, CD.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.652, A:C.654, A:E.676, A:C.737, H2O.31 CD.2: 3 residues within 4Å: Chain A: C.654 Ligands: CD.1, CD.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:C.654, H2O.20, H2O.27, H2O.30 CD.3: 5 residues within 4Å: Chain A: E.676, H.705, C.737 Ligands: CD.1, CD.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.676, A:H.705, A:C.737, H2O.19, H2O.20 CD.4: 4 residues within 4Å: Chain A: C.654, E.676 Ligands: CD.2, CD.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:C.654, A:E.676, H2O.17, H2O.30, H2O.31 CD.5: 2 residues within 4Å: Chain A: H.663, E.691 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.663, A:E.691, A:E.691, H2O.31, H2O.31 CD.6: 1 residues within 4Å: Chain A: E.426 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.426

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain A: F.688, I.689, E.692, Y.693, Y.725, K.727, Q.730 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.693, A:Y.693, A:Y.725, A:Q.730 GOL.8: 7 residues within 4Å: Chain A: I.181, T.182, L.184, E.220, A.223, A.224, P.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.181

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.9: 5 residues within 4Å: Chain A: A.376, V.377, K.378, A.379, E.380 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.379, A:E.380, A:E.380 NO3.10: 5 residues within 4Å: Chain A: R.16, K.19, W.518, R.525, C.526 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.16, A:K.19, A:S.524, A:C.526

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.11: 7 residues within 4Å: Chain A: N.120, P.529, R.570, W.571, S.572, F.573, P.574 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.120, A:R.570, A:W.571 Water bridges: A:N.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wheatley, R.W. et al., Fungal cobalamin-independent methionine synthase: Insights from the model organism, Neurospora crassa. Arch.Biochem.Biophys. (2015)

Release Date

2015-12-09

Peptides

Cobalamin-Independent Methionine synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cobalamin-Independent Methionine synthase

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