SMTL ID : 4zw1.1

Crystal structure of hBRD4 in complex with BL-BI06 reveals a novel synthesized inhibitor that induces Beclin1-independent/ATG5-dependent autophagic cell death in breast cancer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 4V1: 2-(4-hydroxy-3,5-dimethylphenyl)-7-methyl-5,6,7,8-tetrahydropyrido[4',3':4,5]thieno[2,3-d]pyrimidin-4(3H)-one(Non-covalent)

4V1.1: 12 residues within 4Å: Chain A: W.53, P.54, F.55, Q.57, P.58, V.59, L.64, L.66, Y.69, Y.111, N.112, I.118 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.54, A:F.55, A:V.59, A:L.64, A:L.66, A:Y.111, A:I.118 Hydrogen bonds: A:Q.57, A:N.112, A:N.112 Water bridges: A:D.60

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: P.19, T.22, G.80, T.81, K.84 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.20, A:T.22 EDO.3: 4 residues within 4Å: Chain A: P.25, N.26, K.27, P.28 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.27 Water bridges: A:K.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Crystal structure of hBRD4 in complex with BL-BI06 reveals a novel synthesized inhibitor that induces Beclin1-independent/ATG5-dependent autophagic cell death in breast cancer. To Be Published

Release Date

2016-06-22

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4