SMTL ID : 4zwo.1

Crystal structure of organophosphate anhydrolase/prolidase mutant Y212F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

7 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: D.255, H.336, T.379, E.381, E.420 Ligands: MN.2, GOA.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.255, A:H.336, A:E.381, A:E.420, H2O.1 MN.2: 6 residues within 4Å: Chain A: D.244, D.255, T.257, E.420 Ligands: MN.1, GOA.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.244, A:D.244, A:D.255, A:E.420, H2O.1 MN.3: 2 residues within 4Å: Chain A: R.25, N.27 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:R.25, H2O.11 MN.4: 2 residues within 4Å: Chain A: E.24, N.27 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.24, H2O.2 MN.5: 1 residues within 4Å: Chain A: D.309 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.309, H2O.1, H2O.11, H2O.13 MN.7: 6 residues within 4Å: Chain B: D.244, D.255, T.257, E.420 Ligands: MN.8, GOA.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.244, B:D.244, B:D.255, B:E.420, H2O.14 MN.8: 7 residues within 4Å: Chain B: D.255, H.336, T.379, E.381, E.420 Ligands: MN.7, GOA.10 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.255, B:H.336, B:E.381, B:E.420, H2O.14

2 x GOA: GLYCOLIC ACID(Non-covalent)

GOA.6: 8 residues within 4Å: Chain A: F.212, D.244, D.255, H.336, H.343, E.381 Ligands: MN.1, MN.2 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.336, A:H.343 GOA.10: 8 residues within 4Å: Chain B: F.212, D.244, D.255, H.336, H.343, E.381 Ligands: MN.7, MN.8 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.336, B:H.343

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 2 residues within 4Å: Chain B: N.27, D.29 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.27 Water bridges: B:E.24, B:E.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daczkowski, C.M. et al., Engineering the Organophosphorus Acid Anhydrolase Enzyme for Increased Catalytic Efficiency and Broadened Stereospecificity on Russian VX. Biochemistry (2015)

Release Date

2015-10-14

Peptides

organophosphate anhydrolase/prolidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

organophosphate anhydrolase/prolidase

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