SMTL ID : 4zxt.1

Complex of ERK2 with catechol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CAQ: CATECHOL(Non-covalent)

CAQ.1: 11 residues within 4Å: Chain A: I.31, V.39, A.52, K.54, I.84, Q.105, D.106, L.107, M.108, L.156, C.166 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.156 Hydrogen bonds: A:Q.105, A:M.108

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.187, R.191, R.194, H.232, Y.233 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.194, A:Y.233, A:Y.233 Salt bridges: A:R.191, A:R.194 SO4.3: 1 residues within 4Å: Chain A: K.207 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.141, A:K.207, A:K.207, A:K.207 Salt bridges: A:K.207 SO4.4: 1 residues within 4Å: Chain A: I.256 No protein-ligand interaction detected (PLIP)

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.5: 4 residues within 4Å: Chain A: P.247, S.248, D.251, F.296 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.248, A:S.248, A:D.251 Water bridges: A:F.296 NH4.6: 6 residues within 4Å: Chain A: D.179, S.202, G.204, Y.205, T.206, I.209 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.179, A:S.202, A:G.204, A:Y.205, A:T.206 Water bridges: A:T.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim do, Y. et al., A natural small molecule, catechol, induces c-Myc degradation by directly targeting ERK2 in lung cancer. Oncotarget (2016)

Release Date

2016-05-25

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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