SMTL ID : 4zya.1

The N-terminal extension domain of human asparaginyl-tRNA synthetase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.39, H.71 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.39, A:H.71 ZN.2: 2 residues within 4Å: Chain B: E.39, H.71 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.39, B:E.39, B:H.71

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain B: G.1, H.2, G.37, K.38 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.1, B:G.37

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: T.28, G.29, L.30 Chain B: T.28, G.29, L.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.S. et al., Unique N-terminal extension domain of human asparaginyl-tRNA synthetase elicits CCR3-mediated chemokine activity. Int. J. Biol. Macromol. (2018)

Release Date

2016-05-25

Peptides

Asparagine--tRNA ligase, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Asparagine--tRNA ligase, cytoplasmic