SMTL ID : 4zyo.1

Crystal Structure of Human Integral Membrane Stearoyl-CoA Desaturase with Substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.79, H.84, H.116, H.120, H.260 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.79, A:H.84, A:H.116, A:H.120, A:H.260 ZN.2: 4 residues within 4Å: Chain A: H.119, H.228, H.257, H.261 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.119, A:H.228, A:H.257, A:H.261, H2O.1

1 x ST9: STEAROYL-COENZYME A(Non-covalent)

ST9.3: 34 residues within 4Å: Chain A: V.31, N.34, M.38, A.71, I.74, T.75, H.79, F.105, Q.106, N.107, W.112, R.114, D.115, H.116, H.130, W.143, L.144, V.146, R.147, K.148, V.152, K.153, G.156, R.174, Y.213, L.217, T.220, W.221, V.223, N.224, A.251, V.252, E.254, H.257 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.31, A:A.71, A:I.74, A:Q.106, A:W.112, A:W.112, A:W.143, A:L.144, A:T.220, A:V.223 Hydrogen bonds: A:R.33, A:N.34, A:N.107, A:R.114, A:R.114, A:K.148, A:K.148 Salt bridges: A:R.114, A:R.147, A:K.148, A:K.153, A:R.174 pi-Cation interactions: A:R.114, A:R.114

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.4: 7 residues within 4Å: Chain A: A.19, D.20, A.21, H.126, H.149, E.154, K.155 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.19, A:D.20, A:A.21, A:H.126, A:E.154, A:K.155 Salt bridges: A:H.149, A:K.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Crystal structure of human stearoyl-coenzyme A desaturase in complex with substrate. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-06-17

Peptides

Acyl-CoA desaturase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Acyl-CoA desaturase