SMTL ID : 4zze.2 (1 other biounit)

Raffinose and panose binding protein from Bifidobacterium animalis subsp. lactis Bl-04, bound with panose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC: alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-GLC.1: 14 residues within 4Å: Chain A: F.16, K.17, E.19, N.68, D.70, N.124, W.175, Q.178, A.179, Y.250, D.285, F.351, D.353, H.354 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.68, A:Q.178, A:Y.250, A:D.353, A:H.354 Water bridges: A:G.69, A:N.124

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: N.68, D.70 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.70, H2O.7, H2O.8, H2O.8, H2O.11, H2O.18 MG.3: 3 residues within 4Å: Chain A: D.274, S.276, K.277 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.274, A:S.276, H2O.2 MG.4: 2 residues within 4Å: Chain A: P.190, E.191 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.191, H2O.2, H2O.9, H2O.13, H2O.13, H2O.18 MG.5: 1 residues within 4Å: Chain A: K.310 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: Y.330, F.331, R.340 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: N.95, E.96, K.327 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ejby, M. et al., An ATP Binding Cassette Transporter Mediates the Uptake of alpha-(1,6)-Linked Dietary Oligosaccharides in Bifidobacterium and Correlates with Competitive Growth on These Substrates. J. Biol. Chem. (2016)

Release Date

2016-06-29

Peptides

Sugar binding protein of ABC transporter system: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Sugar binding protein of ABC transporter system

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