SMTL ID : 4zzh.1

SIRT1/Activator Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.189, C.192, C.213, C.216 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.189, A:C.192, A:C.213, A:C.216 ZN.3: 4 residues within 4Å: Chain B: C.189, C.192, C.213, C.216 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.189, B:C.192, B:C.213, B:C.216

2 x 4TO: (4S)-N-[3-(1,3-oxazol-5-yl)phenyl]-7-[3-(trifluoromethyl)phenyl]-3,4-dihydro-1,4-methanopyrido[2,3-b][1,4]diazepine-5(2H)-carboxamide(Non-covalent)

4TO.2: 12 residues within 4Å: Chain A: L.24, T.27, P.29, P.30, T.37, Q.40, I.41, N.44, I.45, E.48 Chain B: T.27 Ligands: 4TO.4 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.37, A:Q.40, A:I.41, A:I.41, A:I.45, B:T.27 Hydrogen bonds: A:N.44, A:E.48 4TO.4: 12 residues within 4Å: Chain A: T.27 Chain B: L.24, T.27, P.29, P.30, T.37, Q.40, I.41, N.44, I.45, E.48 Ligands: 4TO.2 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.37, B:Q.40, B:I.41, B:I.41, B:I.45, A:T.27 Hydrogen bonds: B:N.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, H. et al., Crystallographic structure of a small molecule SIRT1 activator-enzyme complex. Nat Commun (2015)

Release Date

2015-07-15

Peptides

NAD-dependent protein deacetylase sirtuin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NAD-dependent protein deacetylase sirtuin-1

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