SMTL ID : 4zzw.1

Geotrichum candidum Cel7A structure complex with cellobiose at 1.5A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: Q.190, G.191, G.205, N.206 Ligands: MG.11 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.190, A:N.160 Hydrophobic interactions: A:F.182, A:F.182 Water bridges: A:G.185

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.2: 11 residues within 4Å: Chain A: Q.175, H.228, T.246, R.251, P.258, D.259, R.267, D.343, W.380, Y.386, R.399 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.175, A:H.228, A:T.246, A:R.251, A:R.251 Water bridges: A:T.226, A:H.228

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: T.48, N.57, L.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.57 Water bridges: A:N.49 NAG.4: 2 residues within 4Å: Chain A: F.306, N.432 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.432

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.5: 1 residues within 4Å: Chain A: S.196 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.197

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 10 residues within 4Å: Chain A: Y.266, R.267, G.269, I.321, P.392, T.394, P.395, G.396, V.397, A.398 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.267, A:P.392, A:G.396, A:V.397, A:A.398 GOL.7: 5 residues within 4Å: Chain A: R.107, Y.145, Y.171, S.369, W.371 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.107, A:Y.145, A:S.369, A:S.369 GOL.8: 8 residues within 4Å: Chain A: E.302, S.325, G.326, N.327, S.328, T.330, D.332, Y.333 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.327, A:N.327, A:S.328, A:T.330, A:Y.333 Water bridges: A:S.325, A:D.332

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 6 residues within 4Å: Chain A: P.137, C.138, S.220, I.221, P.276 Ligands: MG.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.138, A:S.220 PEG.10: 4 residues within 4Å: Chain A: N.37, W.38, N.103, V.104 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.37, A:N.103, A:V.104, A:D.179 Water bridges: A:D.179

2 x MG: MAGNESIUM ION(Non-covalent)

MG.11: 3 residues within 4Å: Chain A: D.64, N.206 Ligands: NAG-NAG.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.64, H2O.4, H2O.4, H2O.4 MG.12: 2 residues within 4Å: Chain A: N.283 Ligands: PEG.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borisova, A.S. et al., Sequencing, Biochemical Characterization, Crystal Structure and Molecular Dynamics of Cellobiohydrolase Cel7A from Geotrichum Candidum 3C. FEBS J. (2015)

Release Date

2015-09-23

Peptides

CELLOBIOHYDROLASE I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CELLOBIOHYDROLASE I

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