- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- GAL- SIA- FUC: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 7 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 4 residues within 4Å:- Chain A: T.166, V.167
- Chain B: R.164, T.166
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:V.167
- Water bridges: A:K.145, A:K.145, A:V.167, B:R.164
- Salt bridges: B:R.164
ACT.6: 3 residues within 4Å:- Chain A: P.46, L.47, G.48
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.47, A:G.48
- Water bridges: A:L.49, A:N.50
ACT.7: 4 residues within 4Å:- Chain A: T.121, T.182, D.183
- Ligands: CA.4
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.121
ACT.12: 4 residues within 4Å:- Chain A: R.164, T.166
- Chain B: T.166, V.167
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Water bridges: A:R.164, B:K.145
- Salt bridges: A:R.164
- Hydrogen bonds: B:V.167
ACT.13: 5 residues within 4Å:- Chain B: N.58, P.62, G.63, N.64
- Ligands: CA.9
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.58
ACT.14: 5 residues within 4Å:- Chain B: D.57, N.58, P.70, L.71, R.72
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.71, B:R.72
- Hydrogen bonds: B:N.58, B:R.72, B:R.72
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loukachevitch, L.V. et al., Structures of the Streptococcus sanguinis SrpA Binding Region with Human Sialoglycans Suggest Features of the Physiological Ligand. Biochemistry (2016)
- Release Date
- 2017-05-24
- Peptides
- Platelet-binding glycoprotein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- GAL- SIA- FUC: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 7 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loukachevitch, L.V. et al., Structures of the Streptococcus sanguinis SrpA Binding Region with Human Sialoglycans Suggest Features of the Physiological Ligand. Biochemistry (2016)
- Release Date
- 2017-05-24
- Peptides
- Platelet-binding glycoprotein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B