SMTL ID : 5lfe.1

Protruding domain of GII.4 human norovirus isolate 8-14 in complex with HBGA type B (triglycan)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x GLA- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose

GLA-FUC-GLA.1: 9 residues within 4Å: Chain A: S.122, T.123, R.124, H.126, H.152, D.153 Chain B: S.221, G.222, Y.223 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.124, A:R.124, A:D.153, B:S.221, B:G.222, A:H.152 Water bridges: A:D.153 Hydrophobic interactions: B:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Four decades of structural evolution of GII.4 norovirus. To be published

Release Date

2017-07-12

Peptides

VP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VP1