SMTL ID : 5odu.1 (3 other biounits)

PllA lectin, monosaccharide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-tetramer

Ligands

4 x AMG: methyl alpha-D-galactopyranoside(Non-covalent)

AMG.1: 9 residues within 4Å: Chain A: Y.38, E.44, Q.57, I.61, D.96, V.97, T.100, D.103 Ligands: CA.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.44, A:E.44, A:Q.57, A:T.100, A:D.103 Water bridges: A:R.40, A:D.41 AMG.3: 11 residues within 4Å: Chain B: Y.38, G.39, E.44, Q.57, P.58, I.61, D.96, V.97, T.100, D.103 Ligands: CA.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.44, B:D.96, B:T.100, B:D.103 Water bridges: B:R.40, B:D.41, B:Q.57 AMG.5: 9 residues within 4Å: Chain C: Y.38, E.44, Q.57, I.61, D.96, V.97, T.100, D.103 Ligands: CA.6 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:E.44, C:E.44, C:D.96, C:T.100, C:D.103 Water bridges: C:R.40, C:D.41 AMG.7: 10 residues within 4Å: Chain D: Y.38, E.44, Q.57, P.58, I.61, D.96, V.97, T.100, D.103 Ligands: CA.8 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.44, D:E.44, D:D.96, D:T.100 Water bridges: D:R.40, D:D.41

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: Y.38, D.96, T.100, D.103, N.104 Ligands: AMG.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.38, A:D.96, A:T.100, A:D.103 CA.4: 6 residues within 4Å: Chain B: Y.38, D.96, T.100, D.103, N.104 Ligands: AMG.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:Y.38, B:D.96, B:T.100, B:D.103 CA.6: 6 residues within 4Å: Chain C: Y.38, D.96, T.100, D.103, N.104 Ligands: AMG.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:Y.38, C:D.96, C:T.100, C:D.103 CA.8: 6 residues within 4Å: Chain D: Y.38, D.96, T.100, D.103, N.104 Ligands: AMG.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:Y.38, D:D.96, D:T.100, D:D.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beshr, G. et al., Photorhabdus luminescens lectin A (PllA): A new probe for detecting alpha-galactoside-terminating glycoconjugates. J. Biol. Chem. (2017)

Release Date

2017-10-04

Peptides

PllA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
A

D
C

PllA

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