SMTL ID : 5v6f.1

Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose

BMA-MAN-MAN.1: 14 residues within 4Å: Chain A: S.29, G.30, F.31, A.32, D.34, T.51, N.52, G.53, G.54, Y.75, W.77, W.129, L.130 Ligands: SO4.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.51, A:G.30, A:F.31, A:A.32, A:D.34, A:T.51, A:G.53, A:G.54, A:Y.75 Water bridges: A:T.51, A:W.77

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Ligands: BMA-MAN-MAN.1, BMA-MAN-MAN.1 No protein-ligand interaction detected (PLIP) SO4.3: 3 residues within 4Å: Chain A: S.104, N.105, K.106 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.105, A:K.106 Water bridges: A:K.106, A:K.106 Salt bridges: A:K.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De, S. et al., Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog. (2018)

Release Date

2018-01-17

Peptides

Hemolysin-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hemolysin-related protein

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