SMTL ID : 5v6k.1

Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Bound to N-acetylglucosaminyl-beta-1,2-mannose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-NAG.1: 15 residues within 4Å: Chain A: S.29, G.30, F.31, A.32, D.34, V.48, T.51, N.52, G.53, G.54, V.55, R.57, Y.75, L.130 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.30, A:F.31, A:A.32, A:D.34, A:T.51, A:G.53, A:G.54, A:Y.75, A:R.57 Water bridges: A:N.52, A:R.57 Hydrophobic interactions: A:F.31

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 15 residues within 4Å: Chain A: S.29, G.30, F.31, A.32, I.33, D.34, T.51, N.52, G.53, G.54, Y.75, W.129, L.130 Ligands: MAN-NAG.1, MAN-NAG.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.30, A:F.31, A:A.32, A:A.32, A:D.34, A:G.53, A:G.54, A:Y.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De, S. et al., Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog. (2018)

Release Date

2018-01-31

Peptides

Hemolysin-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hemolysin-related protein

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