SMTL ID : 5vx9.1

VP8* of P[6] Human Rotavirus RV3 in complex with LNFP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG-GAL-FUC.1: 11 residues within 4Å: Chain A: L.105, H.107, Y.108, N.109, S.110, W.112, T.122, T.123, Y.125, R.147, E.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.109, A:S.110, A:S.110, A:T.123, A:T.123, A:R.147, A:E.150 Water bridges: A:S.127, A:T.123

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.76, F.78, H.91, T.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.69 Salt bridges: A:K.76, A:H.91 SO4.3: 4 residues within 4Å: Chain A: K.92, Y.125, S.126, S.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.127 Water bridges: A:Y.125 Salt bridges: A:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, L. et al., Glycan recognition in globally dominant human rotaviruses. Nat Commun (2018)

Release Date

2018-07-18

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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