- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 2 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 3 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
GLC-GAL-SIA.2: 9 residues within 4Å:- Chain C: S.45, G.46, I.72, F.75, G.76, V.107, W.108, T.109, D.110
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:I.72, C:F.75, C:D.110
- Hydrogen bonds: C:S.45, C:G.76, C:T.109, C:D.110
- Water bridges: C:G.46, C:K.48, C:K.79
- Salt bridges: C:K.48
GLC-GAL-SIA.3: 9 residues within 4Å:- Chain D: S.45, G.46, I.72, F.75, G.76, V.107, W.108, T.109, D.110
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:T.109, D:S.45, D:G.76, D:T.109, D:D.110
- Hydrophobic interactions: D:I.72, D:W.108, D:D.110
- Water bridges: D:S.45, D:G.46
GLC-GAL-SIA.5: 9 residues within 4Å:- Chain E: S.45, G.46, I.72, F.75, G.76, V.107, W.108, T.109, D.110
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:T.109, E:S.45, E:G.76, E:T.109, E:D.110
- Hydrophobic interactions: E:I.72
- 1 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.7: 1 residues within 4Å:- Chain A: D.98
No protein-ligand interaction detected (PLIP)PEG.13: 7 residues within 4Å:- Chain B: I.72, F.75, G.76, V.107, W.108, T.109, D.110
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.76, B:T.109
PEG.23: 5 residues within 4Å:- Chain E: Q.34, T.95, G.96, E.97, D.98
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:T.95
- Water bridges: E:D.98, E:D.98
- 10 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 2 residues within 4Å:- Chain A: R.90, Y.91
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain A: D.25, Y.26, N.27, T.28
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain A: H.67, T.68, N.120
Ligand excluded by PLIPCL.11: 1 residues within 4Å:- Chain D: N.112
Ligand excluded by PLIPCL.14: 3 residues within 4Å:- Chain B: H.67, T.68, N.120
Ligand excluded by PLIPCL.15: 1 residues within 4Å:- Chain B: C.128
Ligand excluded by PLIPCL.16: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain C: V.66, H.67, T.68, N.120
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain D: V.66, H.67, T.68, N.120
Ligand excluded by PLIPCL.24: 4 residues within 4Å:- Chain E: V.66, H.67, T.68, N.120
Ligand excluded by PLIP- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.12: 6 residues within 4Å:- Chain B: N.27, T.28, Y.29, Q.30, S.31, R.59
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.29, B:Y.29, B:S.31
- Salt bridges: B:R.59
MES.17: 6 residues within 4Å:- Chain C: N.27, T.28, Y.29, Q.30, S.31, R.59
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.29, C:S.31
- Salt bridges: C:R.59
MES.19: 5 residues within 4Å:- Chain D: N.27, Y.29, Q.30, S.31, R.59
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Y.29, D:S.31
- Salt bridges: D:R.59
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Evolution of host adaptation in the Salmonella typhoid toxin. Nat Microbiol (2017)
- Release Date
- 2017-10-25
- Peptides
- ArtB protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 2 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 3 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
- 1 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gao, X. et al., Evolution of host adaptation in the Salmonella typhoid toxin. Nat Microbiol (2017)
- Release Date
- 2017-10-25
- Peptides
- ArtB protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E