SMTL ID : 5xg5.1

Crystal structure of Mitsuba-1 with bound NAcGal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

3 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)

A2G.1: 11 residues within 4Å: Chain A: H.18, P.19, K.20, G.21, G.22, V.33, H.35, D.37, H.39, R.41, D.125 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:P.19, A:G.21, A:D.37, A:H.39, A:R.41 Water bridges: A:D.37, A:R.41 Salt bridges: A:H.35 A2G.2: 11 residues within 4Å: Chain A: D.29, H.66, P.67, K.68, G.69, G.70, V.81, H.83, D.85, H.87, R.89 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.66, A:P.67, A:G.69, A:D.85, A:H.87, A:R.89 Salt bridges: A:H.83 A2G.3: 10 residues within 4Å: Chain A: D.77, H.114, P.115, K.116, G.117, G.118, V.129, H.131, D.133, H.135 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:P.115, A:G.117, A:H.135 Water bridges: A:D.77, A:D.77, A:D.133, A:R.137 Salt bridges: A:H.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terada, D. et al., Computational design of a symmetrical beta-trefoil lectin with cancer cell binding activity. Sci Rep (2017)

Release Date

2017-07-12

Peptides

MITSUBA-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MITSUBA-1