SMTL ID : 5a2e.1

Extracellular SRCR domains of human CD6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.229, S.231 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.225, G.242, P.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.242 Water bridges: A:G.242 EDO.3: 5 residues within 4Å: Chain A: E.293, S.297, E.298, S.329, C.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.297, A:E.298 EDO.4: 4 residues within 4Å: Chain A: C.340, S.341, W.342, R.343 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.342, A:W.342 EDO.5: 4 residues within 4Å: Chain A: Q.227, N.229, P.241, G.242 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.227 EDO.6: 4 residues within 4Å: Chain A: R.162, L.163, A.169, C.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.163, A:C.170 EDO.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chappell, P.E. et al., Structures of Cd6 and its Ligand Cd166 Give Insight Into Their Interaction. Structure (2015)

Release Date

2015-07-22

Peptides

T-CELL DIFFERENTIATION ANTIGEN CD6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T-CELL DIFFERENTIATION ANTIGEN CD6