SMTL ID : 5a2f.1

Two membrane distal IgSF domains of CD166

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.167, T.223, Y.224, Y.225, Q.230 Ligands: EDO.14 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.225 Hydrogen bonds: A:N.167, A:Y.225, A:Y.225, A:Q.230 Water bridges: A:N.167 NAG.2: 4 residues within 4Å: Chain A: S.93, E.94, N.95, T.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.94, A:N.95

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Q.230, K.231, T.232 Ligand excluded by PLIP EDO.4: 1 residues within 4Å: Chain A: K.76 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: N.32, F.131, G.226, P.227, G.229 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: Y.80, Y.86, D.88, R.89, L.90 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: D.46, P.48, F.122 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: L.45, F.122, E.123 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: S.135, K.136 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: K.142, A.143, L.144, V.239, F.240 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: R.172, K.175, V.176 Ligands: EDO.12 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: V.176, L.177, H.178, L.180 Ligands: EDO.11 Ligand excluded by PLIP EDO.13: 7 residues within 4Å: Chain A: L.177, V.184, Y.207, K.208, T.209, T.210, D.213 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: N.167, T.223, Q.230 Ligands: NAG.1, EDO.16 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain A: G.36, D.37 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: N.167, I.168, T.169 Ligands: EDO.14 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: K.175, V.176, H.178 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: Q.215, V.239 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chappell, P.E. et al., Structures of Cd6 and its Ligand Cd166 Give Insight Into Their Interaction. Structure (2015)

Release Date

2015-07-22

Peptides

CD166 ANTIGEN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD166 ANTIGEN