SMTL ID : 5a2p.1 (1 other biounit)

THE COMPLEX STRUCTURE OF PDZ DOMAINS IN SYNTENIN-1 WITH 4L PEPTIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ALA- PRO- THR- ASN- GLU- PHE- TYR- ALA: SYNDECAN-4(Non-covalent)

ALA-PRO-THR-ASN-GLU-PHE-TYR-ALA.1: 13 residues within 4Å: Chain B: H.99, V.100, G.101, F.102, I.103, F.104, K.105, T.110, V.113, D.142, A.143, A.146, L.149 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.102, B:I.103, B:F.104, B:V.113, B:D.142, B:A.146, B:L.149 Hydrogen bonds: B:V.100, B:G.101, B:F.102, B:F.104, B:F.104, B:T.110 Water bridges: B:K.105, B:K.105 pi-Stacking: B:H.99 ALA-PRO-THR-ASN-GLU-PHE-TYR-ALA.2: 12 residues within 4Å: Chain A: H.99, V.100, G.101, F.102, I.103, F.104, K.105, V.113, D.142, A.143, A.146, L.149 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.102, A:I.103, A:I.103, A:F.104, A:V.113, A:D.142, A:A.146, A:L.149 Hydrogen bonds: A:V.100, A:G.101, A:F.102, A:F.102, A:F.104, A:F.104, A:K.105 Water bridges: A:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, J.H. et al., Titl the Complex Structure of Pdz Domains in Syntenin-1 with 4L Peptide. To be Published

Release Date

2016-06-01

Peptides

SYNTENIN-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

SYNTENIN-1

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