SMTL ID : 5a2s.1 (1 other biounit)

Potent, selective and CNS-penetrant tetrasubstituted cyclopropane class IIa histone deacetylase (HDAC) inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x OTF: (1S,2S,3S)-1-fluoranyl-2-[4-(5-fluoranylpyrimidin-2-yl)phenyl]-N-oxidanyl-3-phenyl-cyclopropane-1-carboxamide(Non-covalent)

OTF.1: 14 residues within 4Å: Chain A: P.32, E.33, R.37, H.158, H.159, G.167, F.168, D.196, H.198, F.227, D.290, G.330, G.331 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.32, A:E.33, A:E.33, A:F.168, A:F.227 Hydrogen bonds: A:H.159 pi-Stacking: A:F.227

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: D.196, H.198, D.290 Ligands: OTF.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.196, A:D.196, A:H.198, A:D.290 ZN.3: 4 residues within 4Å: Chain A: C.23, C.25, H.31, C.107 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.25, A:H.31, A:C.107

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: D.194, D.196, H.198, S.217, L.218, H.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.194, A:L.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luckhurst, C.A. et al., Potent, Selective, and Cns-Penetrant Tetrasubstituted Cyclopropane Class Iia Histone Deacetylase (Hdac) Inhibitors. Acs Med.Chem.Lett. (2016)

Release Date

2016-02-10

Peptides

HISTONE DEACETYLASE 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HISTONE DEACETYLASE 4

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