SMTL ID : 5a2z.1

Crystal structure of mtPAP in complex with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 6 residues within 4Å: Chain A: G.212, S.213, D.226, R.339, N.358 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.213, A:S.213, A:D.226, A:D.226, A:R.339, A:N.358 Water bridges: A:S.214, A:R.339 GTP.3: 11 residues within 4Å: Chain B: F.211, G.212, S.213, D.226, A.314, C.317, N.358, F.359, N.459, I.467 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.213, B:S.213, B:S.213, B:N.358, B:N.459 Water bridges: B:N.216, B:C.317, B:S.318

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.213, D.224, D.226 Ligands: GTP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.224, A:D.226 MG.4: 4 residues within 4Å: Chain B: S.213, D.224, D.226 Ligands: GTP.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:S.213, B:D.224, B:D.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lapkouski, M. et al., Structure of Mitochondrial Poly(A) RNA Polymerase Reveals the Structural Basis for Dimerization, ATP Selectivity and the Spax4 Disease Phenotype. Nucleic Acids Res. (2015)

Release Date

2015-09-09

Peptides

MITOCHONDRIAL PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MITOCHONDRIAL PROTEIN

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