SMTL ID : 5a3b.1

Crystal structure of the ADP-ribosylating sirtuin (SirTM) from Streptococcus pyogenes in complex with ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x GLY: GLYCINE(Non-covalent)

GLY.1: 6 residues within 4Å: Chain A: F.81, D.82, F.83, D.85, W.86, Y.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.82, A:F.83 GLY.2: 2 residues within 4Å: Chain A: W.134, V.135 No protein-ligand interaction detected (PLIP)

1 x ALA: ALANINE(Non-covalent)

ALA.3: 2 residues within 4Å: Chain A: Q.246, H.250 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.250

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.155, C.159, C.190, C.193 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.155, A:C.159, A:C.190, A:C.193

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.5: 19 residues within 4Å: Chain A: G.43, A.44, G.45, A.49, L.76, T.127, Q.147, G.239, V.240, G.241, H.242, T.243, T.244, N.268, H.269, K.270, Y.272, H.288, I.289 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.44, A:T.127, A:Q.147, A:G.241, A:H.242, A:T.243, A:T.243, A:T.244, A:N.268, A:H.269, A:H.269, A:K.270, A:Y.272, A:H.288, A:I.289 Water bridges: A:Q.147, A:T.244 pi-Stacking: A:H.269, A:H.269

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: T.23, Q.24, E.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.24 Water bridges: A:A.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rack, J.G. et al., Identification of a Class of Protein Adp-Ribosylating Sirtuins in Microbial Pathogens. Mol.Cell (2015)

Release Date

2015-07-29

Peptides

SIR2 FAMILY PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SIR2 FAMILY PROTEIN

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