SMTL ID : 5a44.1

Structure of Bacteriorhodopsin obtained from 20um crystals by multi crystal data collection

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-trimer

Ligands

3 x RET: RETINAL(Covalent)

RET.1: 14 residues within 4Å: Chain A: W.86, T.90, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.90, A:W.182, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:W.189, A:A.215, A:K.216 RET.12: 14 residues within 4Å: Chain B: W.86, T.90, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:T.90, B:W.182, B:W.182, B:Y.185, B:Y.185, B:Y.185, B:Y.185, B:P.186, B:W.189, B:W.189, B:A.215, B:K.216 RET.23: 14 residues within 4Å: Chain C: W.86, T.90, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:T.90, C:W.182, C:W.182, C:Y.185, C:Y.185, C:Y.185, C:Y.185, C:P.186, C:W.189, C:W.189, C:A.215, C:K.216

27 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)(Non-functional Binders)

LI1.2: 8 residues within 4Å: Chain A: L.28, A.44, T.47, L.48, F.54 Chain B: A.110, A.144, Y.147 Ligand excluded by PLIP LI1.3: 3 residues within 4Å: Chain A: W.80, L.123, L.127 Ligand excluded by PLIP LI1.4: 5 residues within 4Å: Chain A: I.52, F.88 Chain B: G.113, G.116, I.117 Ligand excluded by PLIP LI1.5: 3 residues within 4Å: Chain A: Y.64, W.80 Chain B: L.123 Ligand excluded by PLIP LI1.6: 2 residues within 4Å: Chain A: L.58 Ligands: LI1.8 Ligand excluded by PLIP LI1.7: 1 residues within 4Å: Chain A: I.203 Ligand excluded by PLIP LI1.8: 5 residues within 4Å: Chain A: A.14, T.17, A.18, L.61 Ligands: LI1.6 Ligand excluded by PLIP LI1.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LI1.10: 1 residues within 4Å: Chain A: I.198 Ligand excluded by PLIP LI1.13: 8 residues within 4Å: Chain B: L.28, A.44, T.47, L.48, F.54 Chain C: A.110, A.144, Y.147 Ligand excluded by PLIP LI1.14: 3 residues within 4Å: Chain B: W.80, L.123, L.127 Ligand excluded by PLIP LI1.15: 5 residues within 4Å: Chain B: I.52, F.88 Chain C: G.113, G.116, I.117 Ligand excluded by PLIP LI1.16: 3 residues within 4Å: Chain B: Y.64, W.80 Chain C: L.123 Ligand excluded by PLIP LI1.17: 2 residues within 4Å: Chain B: L.58 Ligands: LI1.19 Ligand excluded by PLIP LI1.18: 1 residues within 4Å: Chain B: I.203 Ligand excluded by PLIP LI1.19: 5 residues within 4Å: Chain B: A.14, T.17, A.18, L.61 Ligands: LI1.17 Ligand excluded by PLIP LI1.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LI1.21: 1 residues within 4Å: Chain B: I.198 Ligand excluded by PLIP LI1.24: 8 residues within 4Å: Chain A: A.110, A.144, Y.147 Chain C: L.28, A.44, T.47, L.48, F.54 Ligand excluded by PLIP LI1.25: 3 residues within 4Å: Chain C: W.80, L.123, L.127 Ligand excluded by PLIP LI1.26: 5 residues within 4Å: Chain A: G.113, G.116, I.117 Chain C: I.52, F.88 Ligand excluded by PLIP LI1.27: 3 residues within 4Å: Chain A: L.123 Chain C: Y.64, W.80 Ligand excluded by PLIP LI1.28: 2 residues within 4Å: Chain C: L.58 Ligands: LI1.30 Ligand excluded by PLIP LI1.29: 1 residues within 4Å: Chain C: I.203 Ligand excluded by PLIP LI1.30: 5 residues within 4Å: Chain C: A.14, T.17, A.18, L.61 Ligands: LI1.28 Ligand excluded by PLIP LI1.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP LI1.32: 1 residues within 4Å: Chain C: I.198 Ligand excluded by PLIP

3 x HP6: HEPTANE(Non-covalent)

HP6.11: 3 residues within 4Å: Chain B: L.87 Ligands: HP6.22, HP6.33 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.87 HP6.22: 3 residues within 4Å: Chain C: L.87 Ligands: HP6.11, HP6.33 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.87 HP6.33: 3 residues within 4Å: Chain A: L.87 Ligands: HP6.11, HP6.22 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zander, U. et al., Meshandcollect: An Automated Multi-Crystal Data-Collection Workflow for Synchrotron Macromolecular Crystallography Beamlines. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-11-11

Peptides

BACTERIORHODOPSIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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BACTERIORHODOPSIN

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