SMTL ID : 5a4c.1 (1 other biounit)

FGFR1 ligand complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.112, R.169, T.199, N.201, R.203, W.208 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.201 Water bridges: A:R.112, A:R.169, A:R.169, A:T.200, A:N.201 Salt bridges: A:R.112, A:R.169, A:R.203 SO4.2: 2 residues within 4Å: Chain A: G.81, K.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.82 SO4.3: 2 residues within 4Å: Chain A: S.126, Y.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.127 SO4.4: 2 residues within 4Å: Chain A: K.160, H.221 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.160, A:H.221 SO4.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: K.108, Y.114, R.118 Ligands: XOJ.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.118, A:R.118 EDO.6: 5 residues within 4Å: Chain A: L.204, K.207, G.245, V.246, P.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.245 EDO.7: 6 residues within 4Å: Chain A: W.226, V.230, Y.243, R.260, M.261, W.279 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.261 Water bridges: A:K.207, A:W.226 EDO.8: 5 residues within 4Å: Chain A: A.157, H.221, T.288, F.289, K.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.289, A:K.290 Water bridges: A:H.221 EDO.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x XOJ: 1-tert-butyl-3-[2-[3-(diethylamino)propylamino]-6-(3,5-dimethoxyphenyl)pyrido[2,3-d]pyrimidin-7-yl]urea(Non-covalent)

XOJ.9: 24 residues within 4Å: Chain A: K.24, L.26, G.27, E.28, V.34, A.54, K.56, E.73, M.77, I.87, V.101, V.103, E.104, Y.105, A.106, S.107, K.108, G.109, E.113, L.172, A.182, D.183, F.184 Ligands: EDO.5 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.26, A:A.54, A:I.87, A:V.103, A:L.172 Hydrogen bonds: A:A.106, A:A.106, A:D.183 Water bridges: A:D.183, A:D.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klein, T. et al., Structural and Dynamic Insights Into the Energetics of Activation Loop Rearrangement in Fgfr1 Kinase. Nat.Commun. (2015)

Release Date

2015-08-05

Peptides

FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE KINASE 2, PFEIFFER SYNDROME), ISOFORM CRA_B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FMS-RELATED TYROSINE KINASE 2, PFEIFFER SYNDROME), ISOFORM CRA_B

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