- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NFV: NI-FE OXIDIZED ACTIVE CENTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: E.57, C.528, H.582
6 PLIP interactions:3 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.57, A:C.528, A:H.582, H2O.3, H2O.3, H2O.16
MG.4: 3 residues within 4Å:- Chain B: E.57, C.528, H.582
6 PLIP interactions:3 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.57, B:C.528, B:H.582, H2O.25, H2O.25, H2O.37
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.5: 12 residues within 4Å:- Chain C: H.187, C.190, R.192, R.193, F.196, C.215, L.216, Y.217, C.221, G.223, P.224, I.243
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:H.187, C:C.190, C:C.215, C:C.221
SF4.9: 11 residues within 4Å:- Chain D: H.187, C.190, R.192, R.193, F.196, C.215, L.216, Y.217, C.221, G.223, I.243
4 PLIP interactions:4 interactions with chain D,- Metal complexes: D:H.187, D:C.190, D:C.215, D:C.221
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
F3S.6: 10 residues within 4Å:- Chain A: K.226
- Chain C: T.226, N.228, C.230, W.235, P.242, C.249, L.250, G.251, C.252
3 PLIP interactions:3 interactions with chain C,- Metal complexes: C:C.230, C:C.249, C:C.252
F3S.10: 10 residues within 4Å:- Chain B: K.226
- Chain D: T.226, N.228, C.230, W.235, P.242, C.249, L.250, G.251, C.252
3 PLIP interactions:3 interactions with chain D,- Metal complexes: D:C.230, D:C.249, D:C.252
- 2 x SF3: FE4-S3 CLUSTER(Non-covalent)
SF3.7: 12 residues within 4Å:- Chain A: R.74
- Chain C: E.16, C.17, T.18, C.19, C.20, E.76, T.114, C.115, C.120, G.148, C.149
11 PLIP interactions:8 interactions with chain C, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Salt bridges: C:E.76
- Metal complexes: C:C.17, C:C.19, C:C.19, C:C.20, C:C.115, C:C.120, C:C.149, SF3.7, H2O.11, H2O.44
SF3.11: 12 residues within 4Å:- Chain B: R.74
- Chain D: E.16, C.17, T.18, C.19, C.20, E.76, T.114, C.115, C.120, G.148, C.149
10 PLIP interactions:8 interactions with chain D, 2 Ligand-Water interactions- Salt bridges: D:E.76
- Metal complexes: D:C.17, D:C.19, D:C.19, D:C.20, D:C.115, D:C.120, D:C.149, H2O.33, H2O.52
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Evans, R.M. et al., Mechanism of Hydrogen Activation by [Nife] Hydrogenases. Nat.Chem.Biol. (2016)
- Release Date
- 2015-11-25
- Peptides
- HYDROGENASE-1 LARGE CHAIN: AB
HYDROGENASE-1 SMALL CHAIN: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
SD
T
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x NFV: NI-FE OXIDIZED ACTIVE CENTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x SF3: FE4-S3 CLUSTER(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Evans, R.M. et al., Mechanism of Hydrogen Activation by [Nife] Hydrogenases. Nat.Chem.Biol. (2016)
- Release Date
- 2015-11-25
- Peptides
- HYDROGENASE-1 LARGE CHAIN: AB
HYDROGENASE-1 SMALL CHAIN: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
SD
T